Detailed information of SNP:



SNP ID: sf1121980500(Gbrowse)

Chromosome: chr11

Position: 21980500
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1410 98.79% 1.21%
All Indica790 97.97% 2.03%
All Japonica497 100.00% 0.00%
Aus67 98.51% 1.49%
Indica I375 100.00% 0.00%
Indica II205 94.15% 5.85%
Indica Intermediate210 98.10% 1.90%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1121980500 C->T INTERGENIC None