Detailed information of SNP:
|
SNP ID:
sf1121981528(Gbrowse)
Chromosome: chr11 Position: 21981528 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 95.33% | 4.67% |
| All Indica | 795 | 95.60% | 4.40% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 98.12% | 1.88% |
| Indica II | 211 | 93.36% | 6.64% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121981528 | A->G | INTERGENIC | None |