Detailed information of SNP:
|
SNP ID:
sf1121992681(Gbrowse)
Chromosome: chr11 Position: 21992681 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 66.90% | 33.10% |
| All Indica | 797 | 67.25% | 32.75% |
| All Japonica | 495 | 77.17% | 22.83% |
| Aus | 66 | 13.64% | 86.36% |
| Indica I | 375 | 81.07% | 18.93% |
| Indica II | 211 | 52.13% | 47.87% |
| Indica Intermediate | 211 | 57.82% | 42.18% |
| Temperate Japonica | 333 | 79.28% | 20.72% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121992681 | A->G | INTERGENIC | None |