Detailed information of SNP:
|
SNP ID:
sf1121993014(Gbrowse)
Chromosome: chr11 Position: 21993014 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 66.60% | 33.40% |
| All Indica | 799 | 66.96% | 33.04% |
| All Japonica | 497 | 77.06% | 22.94% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 80.80% | 19.20% |
| Indica II | 213 | 51.64% | 48.36% |
| Indica Intermediate | 211 | 57.82% | 42.18% |
| Temperate Japonica | 335 | 78.81% | 21.19% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121993014 | T->A | INTERGENIC | None |