Detailed information of SNP:
|
SNP ID:
sf1122000433(Gbrowse)
Chromosome: chr11 Position: 22000433 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1400 | 93.07% | 6.93% |
| All Indica | 784 | 99.62% | 0.38% |
| All Japonica | 493 | 84.38% | 15.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 100.00% | 0.00% |
| Indica II | 208 | 99.52% | 0.48% |
| Indica Intermediate | 209 | 99.04% | 0.96% |
| Temperate Japonica | 333 | 84.38% | 15.62% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 67 | 74.63% | 25.37% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122000433 | A->G | INTERGENIC | None |