Detailed information of SNP:
|
SNP ID:
sf1122021189(Gbrowse)
Chromosome: chr11 Position: 22021189 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 75.34% | 24.66% |
| All Indica | 797 | 89.84% | 10.16% |
| All Japonica | 491 | 59.88% | 40.12% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 373 | 95.71% | 4.29% |
| Indica II | 213 | 77.93% | 22.07% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 331 | 67.67% | 32.33% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 66 | 59.09% | 40.91% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122021189 | G->A | INTERGENIC | None |