Detailed information of SNP:
|
SNP ID:
sf1122021610(Gbrowse)
Chromosome: chr11 Position: 22021610 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 80.65% | 19.35% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 490 | 47.76% | 52.24% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 331 | 40.79% | 59.21% |
| Tropical Japonica | 93 | 73.12% | 26.88% |
| Japonica Intermediate | 66 | 46.97% | 53.03% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122021610 | C->T | INTERGENIC | None |