Detailed information of SNP:
|
SNP ID:
sf1122031513(Gbrowse)
Chromosome: chr11 Position: 22031513 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 53.57% | 46.43% |
| All Indica | 799 | 67.96% | 32.04% |
| All Japonica | 496 | 39.52% | 60.48% |
| Aus | 65 | 1.54% | 98.46% |
| Indica I | 375 | 82.13% | 17.87% |
| Indica II | 213 | 52.11% | 47.89% |
| Indica Intermediate | 211 | 58.77% | 41.23% |
| Temperate Japonica | 335 | 32.54% | 67.46% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 67 | 35.82% | 64.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 43.59% | 56.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122031513 | T->C | INTERGENIC | None |