Detailed information of SNP:
|
SNP ID:
sf1122032224(Gbrowse)
Chromosome: chr11 Position: 22032224 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 52.79% | 47.21% |
| All Indica | 797 | 24.72% | 75.28% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 11.73% | 88.27% |
| Indica II | 212 | 44.34% | 55.66% |
| Indica Intermediate | 210 | 28.10% | 71.90% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122032224 | C->A | INTERGENIC | None |