Detailed information of SNP:
|
SNP ID:
sf1122036930(Gbrowse)
Chromosome: chr11 Position: 22036930 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 57.46% | 42.54% |
| All Indica | 795 | 34.84% | 65.16% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 19.73% | 80.27% |
| Indica II | 211 | 51.18% | 48.82% |
| Indica Intermediate | 209 | 45.45% | 54.55% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122036930 | G->A | LOC_Os11g37950(LOC_Os11g37950.1) | UTR_3_PRIME |