Detailed information of SNP:
|
SNP ID:
sf1122037851(Gbrowse)
Chromosome: chr11 Position: 22037851 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1360 | 58.90% | 41.10% |
| All Indica | 792 | 35.10% | 64.90% |
| All Japonica | 485 | 97.32% | 2.68% |
| Aus | 32 | 37.50% | 62.50% |
| Indica I | 373 | 19.57% | 80.43% |
| Indica II | 210 | 51.43% | 48.57% |
| Indica Intermediate | 209 | 46.41% | 53.59% |
| Temperate Japonica | 324 | 96.60% | 3.40% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 67.57% | 32.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122037851 | C->T | INTERGENIC | None |