Detailed information of SNP:
|
SNP ID:
sf1122039084(Gbrowse)
Chromosome: chr11 Position: 22039084 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1382 | 83.14% | 16.86% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 461 | 50.54% | 49.46% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 310 | 39.35% | 60.65% |
| Tropical Japonica | 90 | 80.00% | 20.00% |
| Japonica Intermediate | 61 | 63.93% | 36.07% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122039084 | T->A | INTERGENIC | None |