Detailed information of SNP:
|
SNP ID:
sf1122039891(Gbrowse)
Chromosome: chr11 Position: 22039891 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 55.50% | 44.50% |
| All Indica | 798 | 33.08% | 66.92% |
| All Japonica | 497 | 95.17% | 4.83% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 19.73% | 80.27% |
| Indica II | 213 | 49.77% | 50.23% |
| Indica Intermediate | 210 | 40.00% | 60.00% |
| Temperate Japonica | 335 | 93.73% | 6.27% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122039891 | A->G | LOC_Os11g37960(LOC_Os11g37960.1) | UTR_5_PRIME |