Detailed information of SNP:
|
SNP ID:
sf1122044797(Gbrowse)
Chromosome: chr11 Position: 22044797 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 54.06% | 45.94% |
| All Indica | 795 | 30.44% | 69.56% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 374 | 12.30% | 87.70% |
| Indica II | 210 | 59.05% | 40.95% |
| Indica Intermediate | 211 | 34.12% | 65.88% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122044797 | T->A | INTERGENIC | None |