Detailed information of SNP:
|
SNP ID:
sf1122055085(Gbrowse)
Chromosome: chr11 Position: 22055085 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 80.13% | 19.87% |
| All Indica | 798 | 88.60% | 11.40% |
| All Japonica | 488 | 64.96% | 35.04% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 66.20% | 33.80% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 330 | 74.24% | 25.76% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 64 | 68.75% | 31.25% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122055085 | T->C | INTERGENIC | None |