Detailed information of SNP:
|
SNP ID:
sf1122056714(Gbrowse)
Chromosome: chr11 Position: 22056714 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 58.00% | 42.00% |
| All Indica | 799 | 35.67% | 64.33% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 16.00% | 84.00% |
| Indica II | 213 | 65.73% | 34.27% |
| Indica Intermediate | 211 | 40.28% | 59.72% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122056714 | T->A | INTERGENIC | None |