Detailed information of SNP:
|
SNP ID:
sf1122057164(Gbrowse)
Chromosome: chr11 Position: 22057164 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 57.95% | 42.05% |
| All Indica | 799 | 87.86% | 12.14% |
| All Japonica | 496 | 6.65% | 93.35% |
| Aus | 66 | 80.30% | 19.70% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 63.85% | 36.15% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 93 | 5.38% | 94.62% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 7 | 71.43% | 28.57% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122057164 | A->G | INTERGENIC | None |