Detailed information of SNP:
|
SNP ID:
sf1122060815(Gbrowse)
Chromosome: chr11 Position: 22060815 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 80.90% | 19.10% |
| All Indica | 799 | 89.36% | 10.64% |
| All Japonica | 497 | 64.99% | 35.01% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 66.20% | 33.80% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 74.33% | 25.67% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122060815 | A->G | LOC_Os11g37990(LOC_Os11g37990.1) | INTRON |