Detailed information of SNP:
|
SNP ID:
sf1122063200(Gbrowse)
Chromosome: chr11 Position: 22063200 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 61.65% | 38.35% |
| All Indica | 796 | 65.83% | 34.17% |
| All Japonica | 497 | 62.58% | 37.42% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 373 | 85.25% | 14.75% |
| Indica II | 212 | 35.38% | 64.62% |
| Indica Intermediate | 211 | 62.09% | 37.91% |
| Temperate Japonica | 335 | 72.84% | 27.16% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122063200 | C->T | LOC_Os11g37990(LOC_Os11g37990.1) | Non-Synonymous SNP |