Detailed information of SNP:
|
SNP ID:
sf1122064216(Gbrowse)
Chromosome: chr11 Position: 22064216 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 89.92% | 10.08% |
| All Indica | 799 | 84.23% | 15.77% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 75.12% | 24.88% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122064216 | A->G | INTERGENIC | None |