Detailed information of SNP:
|
SNP ID:
sf1122065003(Gbrowse)
Chromosome: chr11 Position: 22065003 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 92.14% | 7.86% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 491 | 79.43% | 20.57% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 92.15% | 7.85% |
| Tropical Japonica | 93 | 35.48% | 64.52% |
| Japonica Intermediate | 67 | 77.61% | 22.39% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122065003 | T->C | INTERGENIC | None |