Detailed information of SNP:
|
SNP ID:
sf1122065538(Gbrowse)
Chromosome: chr11 Position: 22065538 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1381 | 79.58% | 20.42% |
| All Indica | 798 | 89.22% | 10.78% |
| All Japonica | 495 | 64.04% | 35.96% |
| Aus | 38 | 81.58% | 18.42% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 66.20% | 33.80% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 334 | 73.35% | 26.65% |
| Tropical Japonica | 93 | 30.11% | 69.89% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 36 | 72.22% | 27.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122065538 | T->C | INTERGENIC | None |