Detailed information of SNP:
|
SNP ID:
sf1122077213(Gbrowse)
Chromosome: chr11 Position: 22077213 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 81.26% | 18.74% |
| All Indica | 797 | 74.53% | 25.47% |
| All Japonica | 493 | 93.51% | 6.49% |
| Aus | 64 | 90.62% | 9.38% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 211 | 43.13% | 56.87% |
| Indica Intermediate | 211 | 73.93% | 26.07% |
| Temperate Japonica | 332 | 96.08% | 3.92% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 67 | 83.58% | 16.42% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122077213 | A->G | INTERGENIC | None |