Detailed information of SNP:
|
SNP ID:
sf1122088828(Gbrowse)
Chromosome: chr11 Position: 22088828 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 70.34% | 29.66% |
| All Indica | 799 | 89.49% | 10.51% |
| All Japonica | 495 | 46.26% | 53.74% |
| Aus | 66 | 21.21% | 78.79% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 68.08% | 31.92% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 55.52% | 44.48% |
| Tropical Japonica | 92 | 25.00% | 75.00% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122088828 | T->C | INTERGENIC | None |