Detailed information of SNP:
|
SNP ID:
sf1122105183(Gbrowse)
Chromosome: chr11 Position: 22105183 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1203 | 92.93% | 7.07% |
| All Indica | 733 | 97.41% | 2.59% |
| All Japonica | 411 | 85.16% | 14.84% |
| Aus | 19 | 84.21% | 15.79% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 161 | 96.89% | 3.11% |
| Indica Intermediate | 197 | 96.95% | 3.05% |
| Temperate Japonica | 279 | 79.21% | 20.79% |
| Tropical Japonica | 82 | 98.78% | 1.22% |
| Japonica Intermediate | 50 | 96.00% | 4.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 27 | 92.59% | 7.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122105183 | A->G | LOC_Os11g38050(LOC_Os11g38050.1) | INTRON |