Detailed information of SNP:
|
SNP ID:
sf1122146466(Gbrowse)
Chromosome: chr11 Position: 22146466 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 57.66% | 42.34% |
| All Indica | 795 | 35.97% | 64.03% |
| All Japonica | 496 | 89.31% | 10.69% |
| Aus | 65 | 86.15% | 13.85% |
| Indica I | 374 | 18.18% | 81.82% |
| Indica II | 211 | 56.40% | 43.60% |
| Indica Intermediate | 210 | 47.14% | 52.86% |
| Temperate Japonica | 334 | 92.81% | 7.19% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122146466 | C->T | INTERGENIC | None |