Detailed information of SNP:
|
SNP ID:
sf1122148187(Gbrowse)
Chromosome: chr11 Position: 22148187 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1364 | 64.52% | 35.48% |
| All Indica | 748 | 97.59% | 2.41% |
| All Japonica | 496 | 10.48% | 89.52% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 348 | 99.71% | 0.29% |
| Indica II | 205 | 98.54% | 1.46% |
| Indica Intermediate | 195 | 92.82% | 7.18% |
| Temperate Japonica | 334 | 8.98% | 91.02% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122148187 | C->T | INTERGENIC | None |