Detailed information of SNP:
|
SNP ID:
sf1122160672(Gbrowse)
Chromosome: chr11 Position: 22160672 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 77.49% | 22.51% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 473 | 35.31% | 64.69% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 313 | 40.26% | 59.74% |
| Tropical Japonica | 92 | 20.65% | 79.35% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122160672 | G->A | LOC_Os11g38160(LOC_Os11g38160.1) | Synonymous |