Detailed information of SNP:
|
SNP ID:
sf1122161859(Gbrowse)
Chromosome: chr11 Position: 22161859 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1344 | 81.62% | 18.38% |
| All Indica | 736 | 70.52% | 29.48% |
| All Japonica | 488 | 96.93% | 3.07% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 373 | 89.81% | 10.19% |
| Indica II | 164 | 35.37% | 64.63% |
| Indica Intermediate | 199 | 63.32% | 36.68% |
| Temperate Japonica | 326 | 97.24% | 2.76% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122161859 | G->A | INTERGENIC | None |