Detailed information of SNP:
|
SNP ID:
sf1122162906(Gbrowse)
Chromosome: chr11 Position: 22162906 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 92.04% | 7.96% |
| All Indica | 799 | 90.11% | 9.89% |
| All Japonica | 497 | 94.57% | 5.43% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 88.00% | 12.00% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122162906 | C->T | INTERGENIC | None |