Detailed information of SNP:
|
SNP ID:
sf1122177151(Gbrowse)
Chromosome: chr11 Position: 22177151 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 64.78% | 35.22% |
| All Indica | 798 | 89.47% | 10.53% |
| All Japonica | 496 | 19.56% | 80.44% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 87.47% | 12.53% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 210 | 87.62% | 12.38% |
| Temperate Japonica | 335 | 22.09% | 77.91% |
| Tropical Japonica | 93 | 17.20% | 82.80% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122177151 | G->A | LOC_Os11g38190(LOC_Os11g38190.1) | Synonymous |