Detailed information of SNP:
|
SNP ID:
sf1122181607(Gbrowse)
Chromosome: chr11 Position: 22181607 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1381 | 68.50% | 31.50% |
| All Indica | 771 | 95.46% | 4.54% |
| All Japonica | 489 | 20.45% | 79.55% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 358 | 94.97% | 5.03% |
| Indica II | 209 | 98.56% | 1.44% |
| Indica Intermediate | 204 | 93.14% | 6.86% |
| Temperate Japonica | 330 | 23.03% | 76.97% |
| Tropical Japonica | 93 | 17.20% | 82.80% |
| Japonica Intermediate | 66 | 12.12% | 87.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122181607 | T->C | INTERGENIC | None |