Detailed information of SNP:
|
SNP ID:
sf1122183373(Gbrowse)
Chromosome: chr11 Position: 22183373 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 89.15% | 10.85% |
| All Indica | 799 | 90.74% | 9.26% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122183373 | T->A | INTERGENIC | None |