Detailed information of SNP:
|
SNP ID:
sf1122197351(Gbrowse)
Chromosome: chr11 Position: 22197351 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 83.12% | 16.88% |
| All Indica | 796 | 73.49% | 26.51% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 90.11% | 9.89% |
| Indica II | 213 | 50.23% | 49.77% |
| Indica Intermediate | 209 | 67.46% | 32.54% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122197351 | C->T | LOC_Os11g38270(LOC_Os11g38270.1) | Non-Synonymous SNP |