Detailed information of SNP:
|
SNP ID:
sf1122197822(Gbrowse)
Chromosome: chr11 Position: 22197822 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1379 | 56.06% | 43.94% |
| All Indica | 798 | 79.57% | 20.43% |
| All Japonica | 459 | 25.93% | 74.07% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 212 | 60.38% | 39.62% |
| Indica Intermediate | 211 | 77.25% | 22.75% |
| Temperate Japonica | 307 | 35.50% | 64.50% |
| Tropical Japonica | 90 | 5.56% | 94.44% |
| Japonica Intermediate | 62 | 8.06% | 91.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 31.71% | 68.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122197822 | C->T | LOC_Os11g38270(LOC_Os11g38270.1) | INTRON |