Detailed information of SNP:
|
SNP ID:
sf1122202653(Gbrowse)
Chromosome: chr11 Position: 22202653 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 96.87% | 3.13% |
| All Indica | 785 | 95.54% | 4.46% |
| All Japonica | 496 | 98.79% | 1.21% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 372 | 96.77% | 3.23% |
| Indica II | 205 | 91.71% | 8.29% |
| Indica Intermediate | 208 | 97.12% | 2.88% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122202653 | C->T | INTERGENIC | None |