Detailed information of SNP:
|
SNP ID:
sf1122203784(Gbrowse)
Chromosome: chr11 Position: 22203784 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 91.70% | 8.30% |
| All Indica | 791 | 89.00% | 11.00% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 371 | 92.99% | 7.01% |
| Indica II | 211 | 79.62% | 20.38% |
| Indica Intermediate | 209 | 91.39% | 8.61% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122203784 | T->C | INTERGENIC | None |