Detailed information of SNP:
|
SNP ID:
sf1122222002(Gbrowse)
Chromosome: chr11 Position: 22222002 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 60.84% | 39.16% |
| All Indica | 792 | 83.84% | 16.16% |
| All Japonica | 490 | 22.04% | 77.96% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 372 | 93.55% | 6.45% |
| Indica II | 211 | 62.09% | 37.91% |
| Indica Intermediate | 209 | 88.52% | 11.48% |
| Temperate Japonica | 330 | 24.85% | 75.15% |
| Tropical Japonica | 92 | 10.87% | 89.13% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122222002 | T->C | INTERGENIC | None |