Detailed information of SNP:
|
SNP ID:
sf1122223746(Gbrowse)
Chromosome: chr11 Position: 22223746 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 83.85% | 16.15% |
| All Indica | 793 | 89.28% | 10.72% |
| All Japonica | 497 | 76.46% | 23.54% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 371 | 98.92% | 1.08% |
| Indica II | 213 | 67.61% | 32.39% |
| Indica Intermediate | 209 | 94.26% | 5.74% |
| Temperate Japonica | 335 | 78.51% | 21.49% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122223746 | T->C | INTERGENIC | None |