Detailed information of SNP:
|
SNP ID:
sf1122266535(Gbrowse)
Chromosome: chr11 Position: 22266535 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1377 | 58.17% | 41.83% |
| All Indica | 785 | 85.48% | 14.52% |
| All Japonica | 472 | 11.65% | 88.35% |
| Aus | 66 | 80.30% | 19.70% |
| Indica I | 370 | 94.86% | 5.14% |
| Indica II | 207 | 65.70% | 34.30% |
| Indica Intermediate | 208 | 88.46% | 11.54% |
| Temperate Japonica | 325 | 7.38% | 92.62% |
| Tropical Japonica | 90 | 21.11% | 78.89% |
| Japonica Intermediate | 57 | 21.05% | 78.95% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122266535 | C->G | LOC_Os11g38380(LOC_Os11g38380.1) | Synonymous |