Detailed information of SNP:
|
SNP ID:
sf1122270057(Gbrowse)
Chromosome: chr11 Position: 22270057 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 50.39% | 49.61% |
| All Indica | 795 | 19.75% | 80.25% |
| All Japonica | 497 | 93.76% | 6.24% |
| Aus | 66 | 75.76% | 24.24% |
| Indica I | 375 | 8.27% | 91.73% |
| Indica II | 209 | 39.71% | 60.29% |
| Indica Intermediate | 211 | 20.38% | 79.62% |
| Temperate Japonica | 335 | 95.82% | 4.18% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122270057 | A->G | LOC_Os11g38390(LOC_Os11g38390.1) | INTRON |