Detailed information of SNP:
|
SNP ID:
sf1122304694(Gbrowse)
Chromosome: chr11 Position: 22304694 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 94.59% | 5.41% |
| All Indica | 788 | 95.43% | 4.57% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 66 | 51.52% | 48.48% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 207 | 84.54% | 15.46% |
| Indica Intermediate | 207 | 98.55% | 1.45% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122304694 | C->A | LOC_Os11g38450(LOC_Os11g38450.1) | INTRON |