Detailed information of SNP:
|
SNP ID:
sf1122326699(Gbrowse)
Chromosome: chr11 Position: 22326699 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 88.99% | 11.01% |
| All Indica | 797 | 95.61% | 4.39% |
| All Japonica | 497 | 76.86% | 23.14% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 96.79% | 3.21% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 71.64% | 28.36% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122326699 | T->C | INTERGENIC | None |