Detailed information of SNP:
|
SNP ID:
sf1122327300(Gbrowse)
Chromosome: chr11 Position: 22327300 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 78.51% | 21.49% |
| All Indica | 792 | 89.39% | 10.61% |
| All Japonica | 490 | 59.59% | 40.41% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 369 | 89.97% | 10.03% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 210 | 88.57% | 11.43% |
| Temperate Japonica | 330 | 59.70% | 40.30% |
| Tropical Japonica | 93 | 66.67% | 33.33% |
| Japonica Intermediate | 67 | 49.25% | 50.75% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122327300 | T->G | INTERGENIC | None |