Detailed information of SNP:
|
SNP ID:
sf1122334205(Gbrowse)
Chromosome: chr11 Position: 22334205 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1388 | 65.85% | 34.15% |
| All Indica | 780 | 50.51% | 49.49% |
| All Japonica | 486 | 86.42% | 13.58% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 368 | 23.10% | 76.90% |
| Indica II | 204 | 90.69% | 9.31% |
| Indica Intermediate | 208 | 59.62% | 40.38% |
| Temperate Japonica | 325 | 84.31% | 15.69% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122334205 | T->G | LOC_Os11g38480(LOC_Os11g38480.1) | UTR_5_PRIME |