Detailed information of SNP:
|
SNP ID:
sf1122372909(Gbrowse)
Chromosome: chr11 Position: 22372909 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1336 | 65.04% | 34.96% |
| All Indica | 760 | 52.89% | 47.11% |
| All Japonica | 467 | 88.22% | 11.78% |
| Aus | 57 | 52.63% | 47.37% |
| Indica I | 355 | 71.83% | 28.17% |
| Indica II | 206 | 21.84% | 78.16% |
| Indica Intermediate | 199 | 51.26% | 48.74% |
| Temperate Japonica | 315 | 89.84% | 10.16% |
| Tropical Japonica | 90 | 85.56% | 14.44% |
| Japonica Intermediate | 62 | 83.87% | 16.13% |
| Group VI/Aromatic | 12 | 58.33% | 41.67% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122372909 | T->C | INTERGENIC | None |