Detailed information of SNP:
|
SNP ID:
sf1122391023(Gbrowse)
Chromosome: chr11 Position: 22391023 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 90.81% | 9.19% |
| All Indica | 794 | 97.10% | 2.90% |
| All Japonica | 497 | 80.08% | 19.92% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 372 | 98.39% | 1.61% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 209 | 94.26% | 5.74% |
| Temperate Japonica | 335 | 75.52% | 24.48% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122391023 | T->C | INTERGENIC | None |