Detailed information of SNP:
|
SNP ID:
sf1122395723(Gbrowse)
Chromosome: chr11 Position: 22395723 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1372 | 69.46% | 30.54% |
| All Indica | 771 | 59.53% | 40.47% |
| All Japonica | 486 | 84.16% | 15.84% |
| Aus | 59 | 81.36% | 18.64% |
| Indica I | 359 | 87.47% | 12.53% |
| Indica II | 208 | 15.87% | 84.13% |
| Indica Intermediate | 204 | 54.90% | 45.10% |
| Temperate Japonica | 329 | 85.71% | 14.29% |
| Tropical Japonica | 90 | 85.56% | 14.44% |
| Japonica Intermediate | 67 | 74.63% | 25.37% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122395723 | A->G | INTERGENIC | None |