Detailed information of SNP:
|
SNP ID:
sf1122397018(Gbrowse)
Chromosome: chr11 Position: 22397018 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1359 | 95.29% | 4.71% |
| All Indica | 743 | 92.33% | 7.67% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 368 | 98.91% | 1.09% |
| Indica II | 179 | 76.54% | 23.46% |
| Indica Intermediate | 196 | 94.39% | 5.61% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122397018 | G->T | LOC_Os11g38580(LOC_Os11g38580.1) | Non-Synonymous SNP |