Detailed information of SNP:
|
SNP ID:
sf1122398983(Gbrowse)
Chromosome: chr11 Position: 22398983 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 53.59% | 46.41% |
| All Indica | 778 | 59.90% | 40.10% |
| All Japonica | 493 | 50.51% | 49.49% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 369 | 72.36% | 27.64% |
| Indica II | 203 | 49.26% | 50.74% |
| Indica Intermediate | 206 | 48.06% | 51.94% |
| Temperate Japonica | 333 | 61.56% | 38.44% |
| Tropical Japonica | 93 | 11.83% | 88.17% |
| Japonica Intermediate | 67 | 49.25% | 50.75% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 41 | 34.15% | 65.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122398983 | A->T | LOC_Os11g38580(LOC_Os11g38580.1) | Non-Synonymous SNP |